Selected Publications
- Playbook workflow builder: Interactive construction of bioinformatics workflows. Daniel J.B. Clarke, John Erol Evangelista, Zhuorui Xie, Giacomo B. Marino, Anna I. Byrd, Mano R. Maurya, Sumana Srinivasan, Keyang Yu, Varduhi Petrosyan, Matthew E. Roth, Miroslav Milinkov, Charles Hadley King, Jeet Kiran Vora, Jonathon Keeney, Christopher Nemarich, William Khan, Alexander Lachmann, Nasheath Ahmed, Alexandra Agris, Juncheng Pan, Srinivasan Ramachandran, Eoin Fahy, Emmanuel Esquivel, Aleksandar Mihajlovic, Bosko Jevtic, Vuk Milinovic, Sean Kim, Patrick McNeely, Tianyi Wang, Eric Wenger, Miguel A. Brown, Alexander Sickler, Yuankun Zhu, Sherry L. Jenkins, Philip D. Blood, Deanne M. Taylor, Adam C. Resnick, Raja Mazumder, Aleksandar Milosavljevic, Shankar Subramaniam, Avi Ma’ayan. PLoS Computational Biology
- RummaGEO: Automatic mining of human and mouse gene sets from GEO. Giacomo B. Marino, Daniel J.B. Clarke, Alexander Lachmann, Eden Z. Deng, Avi Ma'ayan. Patterns
- PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices. Alexander Lachmann, Kaeli A. Rizzo, Alon Bartal, Minji Jeon, Daniel J.B. Clarke, Avi Ma’ayan. PeerJ