Selected Publications

• Proteomic-based stemness score measures oncogenic dedifferentiation and enables the identification of druggable targets. Iga Kołodziejczak-Guglas, Renan L.S. Simões, Emerson de Souza Santos, Elizabeth G. Demicco, Rossana N. Lazcano Segura, Weiping Ma, Pei Wang, Yifat Geffen, Erik Storrs, Francesca Petralia, Antonio Colaprico, Felipe da Veiga Leprevost, Pietro Pugliese, Michele Ceccarelli, Houtan Noushmehr, Alexey I. Nesvizhskii, Bożena Kamińska, Waldemar Priebe, Jan Lubiński, Bing Zhang, Alexander J. Lazar, Paweł Kurzawa, Mehdi Mesri, Ana I. Robles, Alicia Francis, Amanda G. Paulovich, Anna P. Calinawan, Antonio Iavarone, Arul M. Chinnaiyan, Bo Wen, Boris Reva, Brian J. Druker, Caleb M. Lindgren, Chandan Kumar-Sinha, Chelsea J. Newton, Chen Huang, Chet Birger, Corbin Day, D. R. Mani, Daniel Cui Zhou, Daniel W. Chan, David Fenyö, David I. Heiman, Dmitry Rykunov, Emily Huntsman, Eric E. Schadt, Eric J. Jaehnig, Shrabanti Chowdhury, Xiaoyu Song, Zeynep H. Gümüş. Cell Genomics
• Precision proteogenomics reveals pan-cancer impact of germline variants. Fernanda Martins Rodrigues, Nadezhda V. Terekhanova, Kathleen J. Imbach, Karl R. Clauser, Myvizhi Esai Selvan, Isabel Mendizabal, Yifat Geffen, Yo Akiyama, Myranda Maynard, Tomer M. Yaron, Yize Li, Song Cao, Erik P. Storrs, Olivia S. Gonda, Adrian Gaite-Reguero, Akshay Govindan, Emily A. Kawaler, Matthew A. Wyczalkowski, Robert J. Klein, Berk Turhan, Karsten Krug, D. R. Mani, Felipe da Veiga Leprevost, Alexey I. Nesvizhskii, Steven A. Carr, David Fenyö, Michael A. Gillette, Antonio Colaprico, Antonio Iavarone, Ana I. Robles, Kuan lin Huang, Chandan Kumar-Sinha, François Aguet, Alexander J. Lazar, Lewis C. Cantley, Urko M. Marigorta, Zeynep H. Gümüş, Matthew H. Bailey, Gad Getz, Eduard Porta-Pardo, Li Ding, Eunkyung An, Meenakshi Anurag, Jasmin Bavarva, Shrabanti Chowdhury, Francesca Petralia, Boris Reva, Eric E. Schadt, Xiaoyu Song, Pei Wang. Cell
• PhosNetVis: A web-based tool for fast kinase-substrate enrichment analysis and interactive 2D/3D network visualizations of phosphoproteomics data. Osho Rawal, Berk Turhan, Irene Font Peradejordi, Shreya Chandrasekar, Selim Kalayci, Sacha Gnjatic, Jeffrey Johnson, Mehdi Bouhaddou, Zeynep H. Gümüş. Patterns