Selected Publications
- Playbook workflow builder: Interactive construction of bioinformatics workflows. Daniel J.B. Clarke, John Erol Evangelista, Zhuorui Xie, Giacomo B. Marino, Anna I. Byrd, Mano R. Maurya, Sumana Srinivasan, Keyang Yu, Varduhi Petrosyan, Matthew E. Roth, Miroslav Milinkov, Charles Hadley King, Jeet Kiran Vora, Jonathon Keeney, Christopher Nemarich, William Khan, Alexander Lachmann, Nasheath Ahmed, Alexandra Agris, Juncheng Pan, Srinivasan Ramachandran, Eoin Fahy, Emmanuel Esquivel, Aleksandar Mihajlovic, Bosko Jevtic, Vuk Milinovic, Sean Kim, Patrick McNeely, Tianyi Wang, Eric Wenger, Miguel A. Brown, Alexander Sickler, Yuankun Zhu, Sherry L. Jenkins, Philip D. Blood, Deanne M. Taylor, Adam C. Resnick, Raja Mazumder, Aleksandar Milosavljevic, Shankar Subramaniam, Avi Ma’ayan. PLoS Computational Biology
- Harmonizome 3.0: Integrated knowledge about genes and proteins from diverse multi-omics resources. Ido Diamant, Daniel J.B. Clarke, John Erol Evangelista, Nathania Lingam, Avi Ma'Ayan. Nucleic Acids Research
- GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets. Giacomo B. Marino, Stephanie Olaiya, John Erol Evangelista, Daniel J.B. Clarke, Avi Ma’ayan. GigaScience